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1.
European Respiratory Journal Conference: European Respiratory Society International Congress, ERS ; 60(Supplement 66), 2022.
Article in English | EMBASE | ID: covidwho-2285430

ABSTRACT

Introduction: The limited sensitivity of microbiological testing, challenges in radiological differential diagnosis, and expectations of quick and accurate diagnosis required developing clinical decision support systems (CDSS). We propose a new deep learning-based hybrid CDSS that combines the advantageous aspects of thorax computed tomography(CT) and reverse transcriptase-polymerase chain reaction(PCR) to overcome the weakness of each one. Method(s): We retrospectively constructed a database that contains CT images of healthy subjects and patients with COVID-19 pneumonia(CP), bacterial/viral pneumonia(BVP), interstitial lung diseases(ILD), and PCR data of patients who were tested positive and negative for SARS-CoV-2. A new 3D-convolutional neural network (3D-CNN) and long short-term memory network(LSTM) based CDSS is developed to perform accurate and robust detection of COVID19 using CT images and PCR data. Result(s): Performance results of the proposed models (Fig1) provide highly reliable diagnosis of COVID-19 with 93.2% and 99.7% AUC for CT and PCR data, respectively. Conclusion(s): Proposed CDSS with state-of-the-art deep learning methods provides similar performance compared to both radiologists in CT evaluation and microbiologists in PCR evaluation and can be safely used. We plan to develop a hybrid CDSS algorithm further, combining laboratory data with CT and PCR models.

2.
Nephrology Dialysis Transplantation ; 37(SUPPL 3):i102-i103, 2022.
Article in English | EMBASE | ID: covidwho-1915669

ABSTRACT

BACKGROUND AND AIMS: Haemodialysis (HD) patients are at increased risk for adverse short-term consequences of COVID-19. In this study, we investigated the characteristics of chronic HD patients in the post-COVID-19 period and compared them with the control group. METHOD: We conducted a national multicentre observational study involving adult chronic HD patients recovering from COVID-19. The control HD group was selected from patients with similar characteristics who did not have COVID-19 in the same center. SARS-CoV-2 RT-PCR negative patients and patients in the active period of COVID-19 were not included. RESULTS: A total of 1223 patients (635 COVID-19 groups, 588 control groups) were included in the study from the data collected from 47 centres between 21 April 2021 and 11 June 2021. The patients' baseline demographics, comorbidities, medications, HD characteristics and basic laboratory tests were quite similar between the groups (Table 1). 28th-day mortality and between 28th day and 90th day mortality were higher in the COVID-19 group than in the control group [19 (3.0%) patients and 0 (0%) patients;15 (2.4%) patients and 4 (0.7%) patients, respectively]. Presence of respiratory symptoms, rehospitalization, need for home oxygen therapy, lower respiratory tract infection and A-V fistula thrombosis were significantly higher in the COVID-19 group in the first 28 days of illness and between 28 and 90 days. Mortality was significantly associated with preexisting COVID-19, age, current smoking, use of tunneled HD catheter, persistence of respiratory symptoms, rehospitalization, need for home oxygen support, presence of lower respiratory tract infection within 28 days and persistence of respiratory symptoms. CONCLUSION: In the post-COVID-19 period, mortality, rehospitalization, respiratory problems and vascular access problems are higher in maintenance HD patients who have had COVID-19 compared to control HD patients. (Table Presented).

3.
6th International Conference on Lean and Agile Software Development, LASD 2022 ; 438 LNBIP:38-60, 2022.
Article in English | Scopus | ID: covidwho-1680630

ABSTRACT

Whilst co-location is the common and preferred kind and key standard for self-organizing agile teams, this option is not always possible for some organizations that have to lead to the distribution of teams and/or individuals in one or another form, especially because of Sars-Cov-2 pandemic (Covid-19) today. The pandemic has forced a shift to virtual working for many organizations, which makes it necessary to investigate its possible effects on the self-organizing agile teams. In this manner, this study aims to investigate emergent challenges and advantages arising from working at home for self-organizing agile teams where every team member works from home with the impact of the Covid-19 pandemic by systemically reviewing the literature. Finally, all the findings, derived from the literature, were discussed from coordination, collaboration and communication, agile practices, agility, emotions and feelings, leadership, productivity, and quality aspects. The results demonstrate that along with some specific challenges for the agile teams during the pandemic, there are several advantages of working at home for them. © 2022, Springer Nature Switzerland AG.

4.
Nephrology Dialysis Transplantation ; 36(SUPPL 1):i249, 2021.
Article in English | EMBASE | ID: covidwho-1402419

ABSTRACT

BACKGROUND AND AIMS: Acute kidney injury (AKI) is common in coronavirus disease-2019 (COVID-19) and the severity of AKI is linked to adverse outcomes. In this study, we investigated the factors associated with in-hospital outcomes among hospitalized patients with COVID-19 and AKI. METHOD: In this multicenter retrospective observational study, we evaluated the characteristics and in-hospital renal and patient outcomes of 578 patients with confirmed COVID-19 and AKI. Data were collected from 34 hospitals in Turkey from March 11 to June 30, 2020. AKI definition and staging were based on the Kidney Disease Improving Global Outcomes criteria. Patients with end-stage kidney disease or with a kidney transplant were excluded. Renal outcomes were identified only in discharged patients. RESULTS: The median age of the patients was 69 years, and 60.9% were males. The most frequent comorbid conditions were hypertension (70.5%), diabetes mellitus (43.8%), and chronic kidney disease (41.5%). The proportions of AKI stages 1, 2, and 3 were 54.0%, 24.7%, and 21.3%, respectively. 291 patients (50.3%) were admitted to the intensive care unit. Renal improvement was complete in 80.7% and partial in 17% of the patients who were discharged. Renal outcomes were worse in patients with AKI stage 3 or baseline CKD. The overall in-hospital mortality in patients with AKI was 38.9%. By multivariate Cox regression analysis, age (hazard ratio [HR] [95% confidence interval (95%CI)]: 1.01 [1.0-1.03], p = 0.035], male gender (HR [95%CI]: 1.47 [1.04-2.09], p = 0.029), diabetes mellitus (HR [95%CI]: 1.51 [1.06-2.17], p = 0.022) and cerebrovascular disease (HR [95%CI]: 1.82 [1.08-3.07], p = 0.023), serum lactate dehydrogenase (greater than two-fold increase) (HR [95%CI]: 1.55 [1.05-2.30], p = 0.027) and AKI stage 2 (HR [95%CI]: 1.98 [1.25-3.14], p = 0.003) and stage 3 (HR [95%CI]: 2.25 [1.44-3.51], p = 0.0001) were independent predictors of in-hospital mortality. The in-hospital mortality rates across AKI stages by age, gender, and diabetes mellitus were shown in the Figure. CONCLUSION: Advanced-stage AKI is associated with extremely high mortality among hospitalized COVID-19 patients. Age, male gender, comorbidities, which are risk factors for mortality in patients with COVID-19 in the general population, are also related to in-hospital mortality in patients with AKI. Renal problems continue in a significant portion of the patients who were discharged.

5.
Journal of Biologically Active Products from Nature ; 11(4):380-394, 2021.
Article in English | Scopus | ID: covidwho-1366962

ABSTRACT

The composition of the essential oil obtained from the dried aerial parts of Senecio massaicus was analyzed by GC/MS. Twenty-two components have been identified and represented 97.41 % of the total oil composition. The major constituents of the essential oil were m-cymene (30.58 %), n-hexadecanoic acid (14.88 %) and docosane-11-decyl (10.43 %). Four methods were used to determine the antioxidant activity: DPPH, ABTS, CUPRAC and reducing power assay. The results indicate that the essential oil extract has moderate to low activity compared to the reference antioxidant compounds. In vitro anticholinesterase activity of the essential oil has also been studied. It exhibited higher inhibitory activity against butyrylcholinesterase (BChE) than against acetylcholinesterase (AChE). Docking studies conducted for Alzheimer's disease-related enzymes have displayed that compounds docosane-11-decyl and octaethyleneglycol monododecyl ether have strong potency, and compounds 15,15’Bi1,4,7,10,13-pentaoxacyclohexadecane and n-Hexadecanoic acid have moderate inhibitory potential. In addition, these three compounds (Docosane-11-decyl, octaethyleneglycol monododecyl ether and 15,15’Bi1,4,7,10,13-pentaoxacyclohexadecane) of the essential oil displayed strong interaction against SARS-CoV-2 main protease and Nsp15 endoribonuclease. Therefore, it could be useful to provide anticholinesterase agent and anti-coronavirus candidate drugs. © 2021 Har Krishan Bhalla & Sons.

6.
Eur Surg ; 52(5): 240-242, 2020.
Article in English | MEDLINE | ID: covidwho-761425
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